Cheapest one-way flights from New York to San Juan in September from $116

Best time to book flights for New York (NYC) to San Juan (SJU) flights at AirHint

AirHint found the following cheapest one-way flights from New York (NYC) to San Juan (SJU) in September 2025 (see full year).

One-Way flights

23 Sep jetBlue direct
18 Sep United direct
19 Sep Delta direct
20 Sep Delta direct
21 Sep Delta direct
22 Sep Delta direct
01 Sep Delta direct
02 Sep Delta direct
03 Sep Delta direct
05 Sep Delta direct

Also check the deals for return flights from New York to San Juan in September.

Skyscanner

The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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