Cheapest return flights from Manila to Kota Kinabalu in June from $87

Best time to book flights for Manila (MNL) to Kota Kinabalu (BKI) flights at AirHint

AirHint found the following cheapest return flights from Manila (MNL) to Kota Kinabalu (BKI) in June 2025 (see full year).

Return flights

12 Jun - 15 Jun Philippines AirAsia Inc. direct
12 Jun - 03 Jul Philippines AirAsia Inc. direct
12 Jun - 29 Jun Philippines AirAsia Inc. direct
07 Jun - 10 Jun Philippines AirAsia Inc. direct
07 Jun - 12 Jun Philippines AirAsia Inc. direct
07 Jun - 15 Jun Philippines AirAsia Inc. direct
30 Jun - 17 Jul Philippines AirAsia Inc. direct
30 Jun - 03 Jul Philippines AirAsia Inc. direct
28 Jun - 17 Jul Philippines AirAsia Inc. direct
28 Jun - 03 Jul Philippines AirAsia Inc. direct
28 Jun - 04 Jul Philippines AirAsia Inc. direct
30 Jun - 04 Jul Philippines AirAsia Inc. direct

Also check the deals for one-way flights from Manila to Kota Kinabalu in June.

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The deals are updated regularly. The prices may go up as tickets are purchased by other travellers. Only the cheapest flights are offered. Select a price to book and secure these cheap prices.

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